README.md

---
configs:
- config_name: clinical_data
  data_files:
  - split: train
    path: Clinical Data (gatortron-base)/*
- config_name: pathology_report
  data_files:
  - split: train
    path: Pathology Report (gatortron-base)/*
- config_name: slide_image
  data_files:
  - split: train
    path: Slide Image (UNI)/*
language:
- en
tags:
- medical
pretty_name: TCGA
---

# Dataset Card for Dataset Name
<!-- Provide a quick summary of the dataset. -->

## Dataset Details

### Dataset Description

<!-- Provide a longer summary of what this dataset is. -->

- **Curated by:** [More Information Needed]
- **Funded by [optional]:** [More Information Needed]
- **Shared by [optional]:** [More Information Needed]
- **Language(s) (NLP):** [More Information Needed]
- **License:** [More Information Needed]

### Dataset Sources [optional]

<!-- Provide the basic links for the dataset. -->

- **Repository:** [More Information Needed]
- **Paper [optional]:** [More Information Needed]
- **Demo [optional]:** [More Information Needed]

## Uses

<!-- Address questions around how the dataset is intended to be used. -->

```python
from datasets import load_dataset

clinical_dataset = load_dataset("Lab-Rasool/TCGA", "clinical_data", split="train")
pathology_report_dataset = load_dataset("Lab-Rasool/TCGA", "pathology_report", split="train")
slide_dataset = load_dataset("Lab-Rasool/TCGA", "slide_image", split="train")
```

## Dataset Creation

### Curation Rationale

<!-- Motivation for the creation of this dataset. -->

[More Information Needed]

### Source Data

<!-- This section describes the source data (e.g. news text and headlines, social media posts, translated sentences, ...). -->

#### Data Collection and Processing

<!-- This section describes the data collection and processing process such as data selection criteria, filtering and normalization methods, tools and libraries used, etc. -->

[More Information Needed]

#### Who are the source data producers?

<!-- This section describes the people or systems who originally created the data. It should also include self-reported demographic or identity information for the source data creators if this information is available. -->

[More Information Needed]


## Citation
<!-- If there is a paper or blog post introducing the dataset, the APA and Bibtex information for that should go in this section. -->

```
@article{honeybee,
      title={HoneyBee: A Scalable Modular Framework for Creating Multimodal Oncology Datasets with Foundational Embedding Models}, 
      author={Aakash Tripathi and Asim Waqas and Yasin Yilmaz and Ghulam Rasool},
      year={2024},
      eprint={2405.07460},
      archivePrefix={arXiv},
      primaryClass={cs.LG}
}
```